rs33459651 SNP Detail

Summary

• ID
  rs33459651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC ACCGAGTTGG CATACTTTTA
  Y
  AGGATGGGGT GTTTCAGCCT CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45280953	mCV22637855	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147881225	ENSMUSSNP5906369	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320548168	CHEV_2_147003978	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33459651					SNP	T	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	51 bp proximal
Cpgi12377	CpG island 12377	400 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates