rs33459721 SNP Detail

Summary

• ID
  rs33459721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49662421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATCAG TATAACTGGA
  TTGGGGTTTG TTTGTTTGTT TGTTTGTTTT GGGGTTTTTT ATTTGTTTTT TGTATATTTA
  ATTATTACTT TATTCAGATC CATGAATCGA AAGGTGACTA CGTTCAGTTG GGCATACTAA
  AAGGATCAGT TGCCAAGTAG TCAAGCGTTT CAAGAGAAAC TGGCAGGCTT CAGTGAGTCG
  M
  TACTATGTGC TGCTATTTGT TTTCATGAAT TTGTGGTTTA GATAGTAACA TCCCCATTCA
  TCTCAGAGAA ATGACCCATC CTGTCATCTT ATGTGCCCAA GAAGTGTGAG CTCACACCTT
  CTTCTGAAGC TGGTACCCCT GGAGTAAGGG GAGACTCTAG GCTTTCTCAA GGCTGTGAGG
  GTGGGGTAGA AAAAGTTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45281734	mCV25117595	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss146526569	ENSMUSSNP5904509	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33459721					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49662421 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	mRNA-UTR
Rr556669	regulatory region 556669	1576 bp distal
Rr556670	regulatory region 556670	825 bp proximal