rs33459866 SNP Detail

Summary

• ID
  rs33459866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31898112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCG GCCAACCTGT AACTAGCATT
  Y
  TGCTGACGAC CAGGCAGCTT ATGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39538284	mCV24384276	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		C
ss60257442	NES15753527	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		C	C	C	C		C	C		C
ss145462667	ENSMUSSNP3154085	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325359843	CHEV_17_31816083	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33459866					SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257442	NES15753527	PERLEGEN	MM_PANEL	f	SNP	C/T
ss159832400	UOL_MMUSEQ_961	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31898112 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Rr525551	regulatory region 525551	1912 bp proximal
Tssr143680	transcription start site region 143680	1199 bp downstream
Tssr143681	transcription start site region 143681	204 bp downstream
Tssr143682	transcription start site region 143682	431 bp upstream
Tssr143683	transcription start site region 143683	501 bp upstream
Tssr143684	transcription start site region 143684	1864 bp upstream
Tssr143685	transcription start site region 143685	1904 bp upstream
Tssr147305	transcription start site region 147305	1014 bp upstream
Tssr147306	transcription start site region 147306	972 bp upstream
Tssr147307	transcription start site region 147307	944 bp upstream
Tssr147308	transcription start site region 147308	598 bp upstream