rs33459906 SNP Detail

Summary

• ID
  rs33459906
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156038079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAACCTGTCT ATACACTGAT TTCCAGTCTA GCCAAGGCTA CACATATTGA AACTGTTTCA
  GAAACAAACA AACAAACAAA CAAAAACAGC ATCAAGTGTG GTTAGATGAG CAAAGGCTTA
  GATTGACAAG TAGTGTAGGG ACATGATGCG ATTAGACATA ATTTAAGAAG TGCAAGTTTG
  GTTGCTCCCA GTGTCAAATC AAAGCATGAT CGCCTCAGTA AATAGCAATT TTACCACTTC
  TCGTTAGCAC TTGCTAAGTC CCACTGGAGA AACCTCTTTT TTGTTGTGGC GGCATCTTGG
  M
  CCTTGCTCCC TAGAGACAAA ATTCGGCTTT TTCTTTTCAG TTCCCGTTGG AATCCTTTTC
  TAAGGATGAG AGAGAGCAAA GGCAGAGGTG AGAAGGTTCA GATGAGGACT TGATAGGGGC
  AGAGCACAGA GGGCGGACTG GTGACAATCG ATCTTGAAGA TTTAGCTCTT CTTCTGGAGA
  AGGAACAAGT CGTTCTGATA AGCTCTTGCG TGTGAAGAGC GGATTGGAAG AGGGAAAGTA
  GTGAGCTGTA AAGACTACGA TCTCCGTGGA GCGTGGTGAC AGACGGGGTA GAGGGAGGTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45280872	mCV23684518	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33459906					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156038079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	86 bp proximal
Gm75148	predicted gene, 75148	within coordinates
Phf20	PHD finger protein 20	488 bp upstream
Rr374121	regulatory region 374121	922 bp downstream
Rr397432	regulatory region 397432	300 bp upstream
Rr568208	regulatory region 568208	1261 bp distal
Rr568209	regulatory region 568209	within coordinates
Rr568210	regulatory region 568210	534 bp proximal
Tssr21145	transcription start site region 21145	548 bp upstream
Tssr27045	transcription start site region 27045	364 bp downstream