rs33461941 SNP Detail

Summary

• ID
  rs33461941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33856659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGTCTGC TTATCCCAGT TGATGATGCT TTGGGTGCAT
  AGCCCTGGCT GATGGGGCAT TTGTCACCTT AACAGGGAAG TCCTGTTGAG AGTACAAATG
  R
  TGAAACAAGG TAGATGAAGC AATACAGGAG GACAGATATG TCCTCACCAT TGCAACAGCC
  ATATCCTAGG TCTACCTCTT TAGAGACGTC TTAAGACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39539127	mCV24098542	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss62686877	NES17316520	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	G	G		A	G	A	A
ss145493334	ENSMUSSNP183436	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss325366939	CHEV_17_33774630	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33461941					SNP	G	G	A	A	A	G	A	G	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686877	NES17316520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33856659 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	371 bp upstream
Rr392542	regulatory region 392542	1808 bp upstream
Tssr143785	transcription start site region 143785	115 bp upstream
Tssr143786	transcription start site region 143786	136 bp upstream
Tssr143787	transcription start site region 143787	404 bp upstream
Tssr143788	transcription start site region 143788	435 bp upstream
Tssr143789	transcription start site region 143789	445 bp upstream