rs33462739 SNP Detail

Summary

• ID
  rs33462739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAGTTT GAGGCCAGCC TGGTCTACAA AGTGAGTTCC
  AGGACAGCCA GGGCTACACA GAGAAATCCT GTCTTGAAAA ATACAAAACA AACAAACAAA
  Y
  AAACAAATAA ATAAATAAAT AAATAAATAA AATATCTAGA AAATAGAAGG AGGTCTGCTG
  AGACTGATCA GGAGTTAACA AGCACTTGTC GTGAAAACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39539135	mCV25219361	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145707982	ENSMUSSNP4048735	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325406347	CHEV_17_47693083	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33462739					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867059 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335189	regulatory region 335189	1859 bp distal
Rr335190	regulatory region 335190	1259 bp distal
Rr335191	regulatory region 335191	659 bp distal
Rr335192	regulatory region 335192	59 bp distal
Rr335193	regulatory region 335193	142 bp proximal
Tssr144956	transcription start site region 144956	1385 bp upstream
Tssr144957	transcription start site region 144957	1470 bp upstream
Tssr144958	transcription start site region 144958	1566 bp upstream
Tssr144959	transcription start site region 144959	1583 bp upstream
Tssr144960	transcription start site region 144960	1653 bp upstream
Tssr144961	transcription start site region 144961	1694 bp upstream
Tssr144962	transcription start site region 144962	1712 bp upstream
Tssr144963	transcription start site region 144963	1773 bp upstream