rs33462876 SNP Detail

Summary

• ID
  rs33462876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGAGCCCCA AGGGGCCTGT AGGGGCGCAG GGCTTCCATA GTGGCCATGT GCTCATCAGA
  GGTCCCTGGA GGTGTGTCCA CAACCAGATA ATCCAGCTGC CCCCAGGCCA CGTCAGACAC
  AAACTGCTTT ATCAGTGCTG CAAAGACCCC AAAGCCCAGC AGTAATCCCT GAGAAAGGGT
  TAGGAAAGGG AAGGCCCATC TTGTCCAGCC CAGGATCTCC ATCAGTTGCT TCTGGGCAGC
  TCCCAGGGAA CCCTGGGGAC ATGTGCCACA CAGGGCAGCC AGGGCCCGCT GATCTTCGAG
  R
  TAACATGGCA GAGCTTCTGG GGTCCCACAA GCTCGCCTTG CTTTCCAGCA GCCTTACCAC
  CTGCTAGCAC TCAACTGTCT GCACACTCCA CGTGGCGGGG TGTAGCCAAC TCCCATTGAG
  GCCCCAGGTG AGGATGCAAC CTAGACTCTA AGGGCATCTG TGCCCTCAAG CCCAGAGAAA
  ATGCCCTGGC TCGAGCACCT TGACAGCACA TCCAGGACAG CTAGCCATTA AATCTAAGTG
  TGTTATTCTT CCCAGGCAGT CTCTCATGGC ATCTAGGATG GTTCAATGTT ACCCGCTTAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39538319	mCV25251496	ABI	CRAMUS_MOUSE	f	SNP		G	A	G
ss145368920	ENSMUSSNP7139027	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33462876					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1086 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	307 bp proximal
Rr405096	regulatory region 405096	1548 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1924 bp upstream
Tssr143106	transcription start site region 143106	1243 bp upstream
Tssr143107	transcription start site region 143107	1256 bp upstream
Tssr143108	transcription start site region 143108	1283 bp upstream
Tssr143109	transcription start site region 143109	1301 bp upstream
Tssr143110	transcription start site region 143110	1970 bp upstream
Tssr146788	transcription start site region 146788	1140 bp downstream
Tssr146789	transcription start site region 146789	1153 bp downstream
Tssr146790	transcription start site region 146790	1181 bp downstream
Tssr146791	transcription start site region 146791	1217 bp downstream
Tssr146792	transcription start site region 146792	1585 bp downstream
Tssr146793	transcription start site region 146793	1664 bp downstream