rs33463309 SNP Detail

Summary

• ID
  rs33463309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24913525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGCACAGA AGGATGTAAG GAGATCCCGG CCCCTCTGTC
  TCTGCCAGTG TCTGGAGACG GGAGTTGGGG CACTGCTATG ACCTATCTTC CTGTAGGGGG
  R
  TGGGGGGGGC CTGAATCTAG AGTTTCTAGG TAGGGCCTGG CACAAAGGAC TGTTTCTCAG
  CACCAGGGGC ACAATGCAGC TAGAGCTCCC CTCACTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39538791	mCV24347450	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145361437	ENSMUSSNP6855791	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33463309					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24913525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	1053 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1683 bp upstream
Rr523392	regulatory region 523392	1145 bp proximal
Rr523393	regulatory region 523393	1507 bp proximal
Rr523394	regulatory region 523394	1968 bp proximal
Tssr143060	transcription start site region 143060	1725 bp upstream
Tssr146764	transcription start site region 146764	1436 bp downstream
Tssr146765	transcription start site region 146765	1514 bp downstream
Tssr146766	transcription start site region 146766	1570 bp downstream
Tssr146767	transcription start site region 146767	1596 bp downstream
Tssr146768	transcription start site region 146768	1646 bp downstream
Tssr146769	transcription start site region 146769	1954 bp downstream
Tssr146770	transcription start site region 146770	1990 bp downstream