rs33463562 SNP Detail

Summary

• ID
  rs33463562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102379100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTCCTT GAAAGAGGAT
  GGGGTTAATG ACACATCTCT GCACTTTCCC TCATCCCAAG AAAATGTTAA GGGTCCCAGG
  TGTCAGAGGT CAGGGTCTCT GTGGTGTGGG ACACATGATT TGACAGACTA TCACAGTGAC
  TCAGAAGGTT TAATAGTCAG CCAAACTCAC TGTCATGCCT GGATAGCCAC CTGCATATCA
  R
  AAAGTTTGCA GAGCTGAGTT TGTTCAGGAC AGTCATCCTC ATGCTGGTGG CTCTCAGTTC
  TTTCCTTTTA ATCTTTAGCA AAGAACGGGC TCTCACATTC TCCTCTCACC CACCTTACAG
  CCCCCGCCTC CTGAGGGCAG TGGGAGGAAA GGATGAGGCA CCACACTCCA TTCTCCTCCA
  GGGAGAATTC TGTGCTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816931	NES10725499	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33463562					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816931	NES10725499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102379100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1184 bp distal
Ngf	nerve growth factor	Intron
Rr582236	regulatory region 582236	1846 bp distal
Rr582237	regulatory region 582237	1134 bp distal
Tssr30929	transcription start site region 30929	1872 bp downstream
Tssr30930	transcription start site region 30930	1852 bp downstream