rs33463575 SNP Detail

Summary

• ID
  rs33463575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70955741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA GTCTCCATTG ATTTCCTTTC
  Y
  GACCGAATAC TCGGTTTTAC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46278786	mCV22782761	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss145126702	ENSMUSSNP6818514	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss322700341	CHEV_8_73026990	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33463575					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70955741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			1770 bp distal
Cpgi20465	CpG island 20465			598 bp distal
Cpgi20466	CpG island 20466			within coordinates
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			1006 bp upstream
Rex1bd	required for excision 1-B domain containing			1204 bp downstream
Rr664779	regulatory region 664779			1017 bp distal
Rr664780	regulatory region 664780			516 bp distal
Rr664781	regulatory region 664781			163 bp proximal
Rr664782	regulatory region 664782			1960 bp proximal
Tssr77747	transcription start site region 77747			1919 bp downstream