rs33464371 SNP Detail

Summary

• ID
  rs33464371
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102379679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAAAAA ACAGAGCCCA
  GGCATGCAAC GAAGCGGTGC CTAGACCCCA CACAGCAGTA ACAGGCTGAG CCAGGGACCT
  GGCCATTTGC CTTCTCCAAA TAAGAACTGC CAAGCACCTC AGTATCTTAG CAGGCCTTCC
  AGTGTGATGA AGTAGGTTTT GCTGAGGATG TATACAAAAT CTCTGGTTGT CTGAGGGGCA
  M
  AGGACCTGTG TTTACAGAGA GTGTCCCTTT TCTCCATTTG ACTGGCACGC CTGACCTTGT
  GTACTGTTGC TCTCACGGTT AGCTAGTTCT AAGATTAACT CTGAGGGAAT TAGTGTCATG
  TCATAGTGAC GTCAGCCAGA TAAATAAAGA GGAAAGAAAG ACCCTTCCTA ACCCTTTCCT
  GGGATGTTTG CATCTTGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816940	NES10725502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33464371					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816940	NES10725502	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102379679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1763 bp distal
Ngf	nerve growth factor	Intron
Rr582237	regulatory region 582237	1713 bp distal