rs33465176 SNP Detail

Summary

• ID
  rs33465176
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131162502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTGCC CCCATCTCCT
  CCAAAGTCAA ACAGAACGCC CTGAGCCAAA GGACATATCC TCCGACCTTC TCGAAGAAGA
  AAGCCTTGAC TCTGAACCCC AATGAAGCTG TCCATCCCCT CCCTTCCTCA CAGAAATCCA
  GCTAGGAGGT TCTGTCCAGA TCACGTGACC TACAGAGATC CTCCATACTC AGCAGAGATT
  K
  GCAGCACATA GTTTCAAATC CTTCTTTAAT ATAGAAACAC AGCATCACAT GCCTGTAATT
  CCAGCTACTC AGGAGACTGG GGCAGGAGGA TTTAAGTTCA AGGCCAGCCT GGGTAATTAA
  GCAAGACCCT CTGGCTCAGT GGTAGAATAT CTGACTAACA TTCAGGGGCA CTGAAATCAG
  TCTTTAATAA CGCCAAGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49489212	NES12874009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33465176					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49489212	NES12874009	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131162502 () rs orientation: forward

Symbol	Name	Function Class
Rassf5	Ras association (RalGDS/AF-6) domain family member 5	within coordinates
Rr28475	regulatory region 28475	901 bp distal
Tssr13566	transcription start site region 13566	1086 bp upstream