rs33465478 SNP Detail

Summary

• ID
  rs33465478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102375469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGGGAC AGAAACAGAT
  CTAGTTAGAG CTAGCAATGA ACTTTTATCA AGACGTGTAA ATATGAACAA CAATTTGGGG
  GCAGGACAGC TGGGCTTAGA TCTTACTCAC TTTGCTTTTT AAAATTTCTT CTTTTGGAAA
  AAACACAAGT GATTGAAATC CTTCTGTCCT TCAAGGTGAC ACCACAAGGA CACAAACAAA
  R
  GCTCAGCTTG TGTCATTTGT AGTTCCACCC CTGAATGCAC AGGTAGTTAT TATTTGAGCT
  TGTGCTTTAA AAAAAATACA GTGTTATATG TGAAATGATT AATGGAGAAA TGTATCCTAT
  TATCTGGTAA TTGTTAGTTT TTCATTAACA GTGATAAGTT TCCTCACAGA GCATCATGGC
  CATGATGTCA GCTCTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816868	NES10725460	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33465478					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816868	NES10725460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102375469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1631 bp proximal
Ngf	nerve growth factor	1766 bp upstream
Rr582235	regulatory region 582235	1266 bp distal
Rr582236	regulatory region 582236	1513 bp proximal
Rr582237	regulatory region 582237	1786 bp proximal
Tssr30928	transcription start site region 30928	1482 bp upstream
Tssr30929	transcription start site region 30929	1745 bp upstream
Tssr30930	transcription start site region 30930	1765 bp upstream