TTTCTGCTAT TCTGGTGTTG CCTGGTCTCT CACCTTTACT CCTAATGTGT GTTCATCCAC CAGCCTGGAC CTCACAGAGC ATTAACAAGG AAAAAAAAAG Y TCACTCTCTT CTTCCTTCAT CCTCCCCAGA GTACCTGAAA TGGCATGATG GTAGGTGTGG GGACAAAGTC AAAGTCAAAG GGAAGTTGAA ATTCAGAGGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46816874 | NES10725465 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs33465483 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46816874 | NES10725465 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:102375767 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13626 | CpG island 13626 | 1333 bp proximal | ||||||
Ngf | nerve growth factor | 1468 bp upstream | ||||||
Rr582235 | regulatory region 582235 | 1564 bp distal | ||||||
Rr582236 | regulatory region 582236 | 1215 bp proximal | ||||||
Rr582237 | regulatory region 582237 | 1488 bp proximal | ||||||
Tssr30928 | transcription start site region 30928 | 1184 bp upstream | ||||||
Tssr30929 | transcription start site region 30929 | 1447 bp upstream | ||||||
Tssr30930 | transcription start site region 30930 | 1467 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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