rs33465879 SNP Detail

Summary

• ID
  rs33465879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122641970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCAACA GAACCCTACA
  CGAAACAAAC AAACAAAAAT TCTAGTGTAT AGCAATGCAC TCCCTAGAAG CAAGGTGGAA
  ACTGGTTAGG TCACAGCCTC TTCTGGAGGA TCAGGTGACT GCCTGCGAGG TGGGGGGTGA
  GAGGGTGGGA GGGATGGAGA GCTGGTGGGT CTCCCTCCTA GCTGGATTCC AGTTCTGTCG
  Y
  ACCTACAGCA AGGGGCACTG AGAGTAGGAA GGTCATGACC TCTCTTAGTT TGTCTGTGAT
  GCTCACTGGG TTTGGCTTTT GTTCTGTAGT CCCCTCCTTC AGGGGCTGGA GGTGCACCCT
  ACAACACGGG TTCCCAGTTT TTCCCTCAGG CCATCTTCCT CCTTGTCCGG TCCCCTCCTG
  AAAGATGTTT GGTGGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45782514	mCV23330782	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321668951	CHEV_5_122953916	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33465879					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122641970 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	1682 bp upstream
Cpgi16553	CpG island 16553	849 bp distal
Gm57291	predicted gene, 57291	305 bp downstream
Rr378565	regulatory region 378565	within coordinates
Rr399329	regulatory region 399329	154 bp downstream
Tssr48701	transcription start site region 48701	1425 bp downstream
Tssr53131	transcription start site region 53131	1762 bp upstream
Tssr53132	transcription start site region 53132	1731 bp upstream
Tssr53133	transcription start site region 53133	1663 bp upstream
Tssr53134	transcription start site region 53134	1629 bp upstream
Tssr53135	transcription start site region 53135	1613 bp upstream
Tssr53136	transcription start site region 53136	1253 bp upstream
Tssr53137	transcription start site region 53137	1165 bp upstream