rs33466239 SNP Detail

Summary

• ID
  rs33466239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131160859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCCTGC ACACCATTCA
  CACTTTCACT AGCAACACTG GTAGGAAAGC TTTGCCCAGC ATCCATTGCT ACTCGATGGT
  CCTTGCTCAC TCTGCTTCAC AATGCTTGCC GTGTAAGCTA AGAGACAGGC AGAATGGTCC
  CTCAAAGGCA CCAGGTTCTA CTGGATCAGG AAGCCTGGTC CCAGTGGCTA CTATCCTAAG
  Y
  CATAGCCCTT CTAAAACCCA CAGCCTAAAC AGGGTCTTCA AACCAGGACG AGTGTGCCCA
  TCTGCCATGC CTGCCTAGCT TCAATCAGCC AAGGTGACAG CACCCACACC TTGCTCTTTG
  CAGAGTCGGG GGGATGGAGG GGGGACCAAG AAATGGTTCT GAGCTCACTA TTAATTGCCA
  GGCTGCCTAA AAGACCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49489228	NES12873995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33466239					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49489228	NES12873995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131160859 () rs orientation: forward

Symbol	Name	Function Class
Rassf5	Ras association (RalGDS/AF-6) domain family member 5	within coordinates
Rr28475	regulatory region 28475	within coordinates
Tssr13566	transcription start site region 13566	538 bp downstream