rs33466356 SNP Detail

Summary

• ID
  rs33466356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102375822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGTTTC CTCACAGAGC
  ATCATGGCCA TGATGTCAGC TCTGTTTTCT GCTATTCTGG TGTTGCCTGG TCTCTCACCT
  TTACTCCTAA TGTGTGTTCA TCCACCAGCC TGGACCTCAC AGAGCATTAA CAAGGAAAAA
  AAAAGTTCAC TCTCTTCTTC CTTCATCCTC CCCAGAGTAC CTGAAATGGC ATGATGGTAG
  S
  TGTGGGGACA AAGTCAAAGT CAAAGGGAAG TTGAAATTCA GAGGACTGGA AATACATCAA
  TAGGTCCTCT CCTTCCCACG TGACCTTCAA TGGGGAAAAA GGACCACCTG GGCCTCACTC
  CATCCCAACT TCATGGAGCA TGATTCTTGC CTAGACTAAG GTGTCACCTT CGTACCTTAC
  CTTCCCTCTG TCACTCACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816877	NES10725468	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33466356					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816877	NES10725468	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102375822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1278 bp proximal
Ngf	nerve growth factor	1413 bp upstream
Rr582235	regulatory region 582235	1619 bp distal
Rr582236	regulatory region 582236	1160 bp proximal
Rr582237	regulatory region 582237	1433 bp proximal
Tssr30928	transcription start site region 30928	1129 bp upstream
Tssr30929	transcription start site region 30929	1392 bp upstream
Tssr30930	transcription start site region 30930	1412 bp upstream