rs33466527 SNP Detail

Summary

• ID
  rs33466527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:5661435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT GCAATGAGAT AGCTCTGGGT
  Y
  CCAAAGAGAG ACTGTCTCAA AAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45282118	mCV23524713	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss146274397	ENSMUSSNP3501967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320209583	CHEV_2_5577670	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33466527					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5661435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1d	calcium/calmodulin-dependent protein kinase ID			Intron
				Noncoding-Transcript-Variant
Rr551239	regulatory region 551239			1409 bp proximal
Tssr22412	transcription start site region 22412			771 bp downstream