rs33466847 SNP Detail

Summary

• ID
  rs33466847
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43971617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTGTAG CTGTCTTCAG
  ACACACCAAA AGAGGGTATC AGATCCCATT ACAGATGGTT GTGAGCCACC ATGTGGATGC
  TGGGAATTGA ACTCAGGACC TTCAGAAGAG CAGTCAGTGC TTTTATCCGC TGAGGCATCT
  CTCCAGCCCT AGAATAGCCT GTTATAAATG GAAATATGTC TAATTCTCAT CAAACTTCTA
  K
  GGAAAAGCTG CCTTTTCTTT CCTCCCTTCC CTCCCATCCC ATTTTTTGTT CATTTTAATC
  TTAAGATTTA CTCATTGTTT TCATCAACTT TGTAATTGTA AGTTAACTTA ATCCAAAAGA
  AAAAATTAAC ATTCTGATCC CAAGAAATTC TTTCAAGTTA CAATTTAATA TATTTTAATA
  TATTTGCTCA TAGAGCAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47302237	NES11082591	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33466847					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47302237	NES11082591	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43971617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	1058 bp proximal
Gm57117	predicted gene, 57117	within coordinates
Rr29382	regulatory region 29382	583 bp proximal
Rr366891	regulatory region 366891	1027 bp upstream
Tpp2	tripeptidyl peptidase II	1513 bp upstream
Tssr6550	transcription start site region 6550	1151 bp upstream
Tssr6551	transcription start site region 6551	1223 bp upstream
Tssr6552	transcription start site region 6552	1523 bp upstream
Tssr11507	transcription start site region 11507	1380 bp downstream