rs33466850 SNP Detail

Summary

• ID
  rs33466850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43971841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCCCTC CCATCCCATT
  TTTTGTTCAT TTTAATCTTA AGATTTACTC ATTGTTTTCA TCAACTTTGT AATTGTAAGT
  TAACTTAATC CAAAAGAAAA AATTAACATT CTGATCCCAA GAAATTCTTT CAAGTTACAA
  TTTAATATAT TTTAATATAT TTGCTCATAG AGCAAAGTAT GAGGAGTCAA TGGAAATGCT
  R
  TGGTTTGAAA CAAATGGCAT ACACGGGATT CTAGGAACCT GCCTCTTAAA CTGGAGACCA
  TAGAAATGCA CAGGGCCCAT GATTGAATAG GAAAAAATTA TTTTCATCCT CCACATGTTC
  TTAATTATGA ACACAGGCAA CCTTTGTTAT TAAAGTGTGT AGTTTAGATA TATTCAAATG
  CCATTTACAA TTGTTTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47302240	NES11082592	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33466850					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47302240	NES11082592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43971841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	834 bp proximal
Gm57117	predicted gene, 57117	within coordinates
Rr29382	regulatory region 29382	359 bp proximal
Rr366891	regulatory region 366891	803 bp upstream
Tpp2	tripeptidyl peptidase II	1289 bp upstream
Tssr6550	transcription start site region 6550	927 bp upstream
Tssr6551	transcription start site region 6551	999 bp upstream
Tssr6552	transcription start site region 6552	1299 bp upstream
Tssr11507	transcription start site region 11507	1156 bp downstream