rs33466953 SNP Detail

Summary

• ID
  rs33466953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:19191392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA TATTCTTAAT TTCAGCAGGC
  Y
  TGTCCAATGC CTCGTCCATT AACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46279178	mCV25229169	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148777479	ENSMUSSNP1582558	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322523304	CHEV_8_19141376	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33466953					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19191392 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45826	predicted gene 45826			Intron
Spag11b	sperm associated antigen 11B			Coding-Synonymous
				Splice-Site
Tssr76531	transcription start site region 76531			609 bp downstream
Tssr76532	transcription start site region 76532			within coordinates
Tssr76533	transcription start site region 76533			53 bp upstream
Tssr76534	transcription start site region 76534			71 bp upstream
Tssr76535	transcription start site region 76535			106 bp upstream
Tssr76536	transcription start site region 76536			1228 bp upstream
Tssr80550	transcription start site region 80550			95 bp downstream
Tssr80551	transcription start site region 80551			1282 bp downstream
Tssr80552	transcription start site region 80552			1457 bp downstream