rs33467070 SNP Detail

Summary

• ID
  rs33467070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131160630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTGCTG GACCCAGGAA
  ATAGGGGAGG AGGAATGAAG CATCAGTGAG AATAGGTAAT TGATTGCTAT TGTCTCTCCT
  GCTCATCTTT CATAAACTCC TCCTCTGTCT CTCTATCCCA GCTAAGGACT ATTCTCATCC
  TAATTAGTAG TGTTCAGGAA AGAAAAGCAA GCAGTGGCCA GTCACTGCCT GAGGGTAGGT
  Y
  TCTTCCAGAC AGCTCCACCC AGCAGCATCC AGCCCTGCAC ACCATTCACA CTTTCACTAG
  CAACACTGGT AGGAAAGCTT TGCCCAGCAT CCATTGCTAC TCGATGGTCC TTGCTCACTC
  TGCTTCACAA TGCTTGCCGT GTAAGCTAAG AGACAGGCAG AATGGTCCCT CAAAGGCACC
  AGGTTCTACT GGATCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49489240	NES12873985	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33467070					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49489240	NES12873985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131160630 () rs orientation: forward

Symbol	Name	Function Class
Rassf5	Ras association (RalGDS/AF-6) domain family member 5	within coordinates
Rr28475	regulatory region 28475	within coordinates
Tssr13566	transcription start site region 13566	767 bp downstream