rs33467079 SNP Detail

Summary

• ID
  rs33467079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84440078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT TTCCAAGCCA GACAGAGCTA
  Y
  GTGGTGAGAC CTTGTCTCAA TAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46279279	mCV23003773	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145360596	ENSMUSSNP2451374	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss322745591	CHEV_8_86237348	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33467079					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84440078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	1461 bp proximal
Ddx39a	DEAD box helicase 39a	1728 bp upstream
Rr382392	regulatory region 382392	within coordinates
Rr401010	regulatory region 401010	1525 bp upstream
Rr666291	regulatory region 666291	1078 bp proximal
Rr666292	regulatory region 666292	1238 bp proximal
Tssr78284	transcription start site region 78284	1742 bp upstream
Tssr78285	transcription start site region 78285	1778 bp upstream
Tssr78286	transcription start site region 78286	1790 bp upstream
Tssr78287	transcription start site region 78287	1856 bp upstream