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rs33467210 SNP Detail
Summary
  • ID
    rs33467210
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:102376414 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAGCTGAGG TGTAAACACC
    ATAGAGGAAG GGGAGGTCAA ACGGGGAAGA CCCCATCAGC TCCTGAATCT ATCAGATCCA
    AGACATTCTG GAGGGCCAAC TGAGGACCCC CCACCATAAG TAAGTAGACA AAAGAGGTGA
    GAGAGAATTG AGGTGAGCCC TGGGGTGGTG CAGAAGGCCT GGCTTTCTCC TGGGTCTGTG
    Y
    TTACTGACTC CTAAAAACCG ACAGAAGCCC TAGGACCCCA GATCTAGAAA CACGCAGGGA
    GCACATACAG ACACAGTTCC ATCTACAGTT TCCAAGGGAC CAGCTCTCCT GGGAGGCCCC
    TGCAATGCCA GTGCTAAGGC TGGCAGTGGG AGTGGGAGTT GGGGTAATCT GAACACCTAA
    GGTCCTCTTC CTTTGACCTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss46816892 NES10725481 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs33467210 SNP T T T T T T C T T T C T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46816892 NES10725481 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:102376414 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13626 CpG island 13626 686 bp proximal
Ngf nerve growth factor 821 bp upstream
Rr582236 regulatory region 582236 568 bp proximal
Rr582237 regulatory region 582237 841 bp proximal
Tssr30928 transcription start site region 30928 537 bp upstream
Tssr30929 transcription start site region 30929 800 bp upstream
Tssr30930 transcription start site region 30930 820 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory