GAAGCTGAGG TGTAAACACC ATAGAGGAAG GGGAGGTCAA ACGGGGAAGA CCCCATCAGC TCCTGAATCT ATCAGATCCA AGACATTCTG GAGGGCCAAC TGAGGACCCC CCACCATAAG TAAGTAGACA AAAGAGGTGA GAGAGAATTG AGGTGAGCCC TGGGGTGGTG CAGAAGGCCT GGCTTTCTCC TGGGTCTGTG Y TTACTGACTC CTAAAAACCG ACAGAAGCCC TAGGACCCCA GATCTAGAAA CACGCAGGGA GCACATACAG ACACAGTTCC ATCTACAGTT TCCAAGGGAC CAGCTCTCCT GGGAGGCCCC TGCAATGCCA GTGCTAAGGC TGGCAGTGGG AGTGGGAGTT GGGGTAATCT GAACACCTAA GGTCCTCTTC CTTTGACCTC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46816892 | NES10725481 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs33467210 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46816892 | NES10725481 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:102376414 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13626 | CpG island 13626 | 686 bp proximal | ||||||
Ngf | nerve growth factor | 821 bp upstream | ||||||
Rr582236 | regulatory region 582236 | 568 bp proximal | ||||||
Rr582237 | regulatory region 582237 | 841 bp proximal | ||||||
Tssr30928 | transcription start site region 30928 | 537 bp upstream | ||||||
Tssr30929 | transcription start site region 30929 | 800 bp upstream | ||||||
Tssr30930 | transcription start site region 30930 | 820 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 03/18/2025 MGI 6.24 |
![]() |
|