rs33467538 SNP Detail

Summary

• ID
  rs33467538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30224826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC TTTTAGGAAG CTGTTCACAC
  R
  TCATACGTTT GAACAGATCC AGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39539102	mCV24979313	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145438787	ENSMUSSNP3874666	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33467538					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30224826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	69 bp distal
Gm50019	predicted gene, 50019	1060 bp upstream
Rr525144	regulatory region 525144	1617 bp distal
Rr525145	regulatory region 525145	1109 bp distal
Rr525146	regulatory region 525146	778 bp distal
Rr525147	regulatory region 525147	within coordinates
Rr525148	regulatory region 525148	1896 bp proximal
Tssr143600	transcription start site region 143600	1459 bp downstream
Tssr143601	transcription start site region 143601	1333 bp downstream
Tssr143602	transcription start site region 143602	1006 bp downstream
Tssr143603	transcription start site region 143603	976 bp downstream
Tssr143604	transcription start site region 143604	754 bp downstream
Tssr143605	transcription start site region 143605	59 bp downstream
Tssr143606	transcription start site region 143606	35 bp upstream
Tssr143607	transcription start site region 143607	1803 bp upstream
Tssr147242	transcription start site region 147242	1212 bp upstream
Tssr147243	transcription start site region 147243	212 bp upstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates