rs33468021 SNP Detail

Summary

• ID
  rs33468021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102377758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCCAGC CTGAGCTCTC
  AGGCTAGAAG GGGACAGCGC TCAAGAGAGC CTGGAGTGAG GGATGCGCGC GCTGCGAGCG
  CGCTGGGGTG GCGGAACAGT AGCCCGCGCG CGGTAGAGGG CGAGTGCACA GCACGCCGAC
  TGGGCAGTGC TCACAGACCC AAGAGCGCCT CTCTGCTCCT AGGTAAGAGG ACTGTCAGCC
  W
  GGGTGATCTA GACTCGGTGT TTGTAGCAGG GTTCAGAGTG TAATATTGTG GGTACCAAGG
  GTTGATTCTG GAAGCTTGGG TTCCAAGTGC CGAGCACCAG GGTCCTCGGT GGGGCCTGCT
  GGGCATCCCA AGGCATAGCC TTACTGCTTG GGTCACCCAG TACATTCAGC TGTCTGCTGC
  CAGGTGTGGC AGAGGCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816904	NES10725489	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33468021					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816904	NES10725489	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102377758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	within coordinates
Ngf	nerve growth factor	Intron
Rr582236	regulatory region 582236	504 bp distal
Rr582237	regulatory region 582237	within coordinates
Tssr30928	transcription start site region 30928	799 bp downstream
Tssr30929	transcription start site region 30929	530 bp downstream
Tssr30930	transcription start site region 30930	510 bp downstream