rs33468028 SNP Detail

Summary

• ID
  rs33468028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43972433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAAGGT GTCTTGAGTT
  TGTCAATGGG ATAATTAAGA TTACTCTGGG CGCCTTCTTG CTGCTGGGAC TTTTGGAGTA
  GACACAGCAG TCGCTGCCAC TAAAGAGAAG AATTACCACA CTTATGGCTG TGGTTCGGTG
  CTCAGTATTT CAGAGGCCTC CAGGCAGGCT ACACACTGAA AAAACGTGCA GAATCTCTCA
  Y
  TGGTACAGAG TAGATTTGTC ACAAATAGGA AAATATTAAT TCACCCCCAC AATATTCTTA
  ATTATGAATG TTGGCAACCT TTGTTACTGG ATAATCTGTG TAGTTTAAAT TTCAAATGCC
  ATTTACGATT GCTGTCACTG TGCATCCTAA TGGGAAAAAA ACCCCGCAAA CTATGGCTCG
  GTAACTGTGT TACAAAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47302258	NES11082506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33468028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47302258	NES11082506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43972433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	242 bp proximal
Gm57117	predicted gene, 57117	within coordinates
Rr29382	regulatory region 29382	within coordinates
Rr366891	regulatory region 366891	211 bp upstream
Tpp2	tripeptidyl peptidase II	697 bp upstream
Tssr6550	transcription start site region 6550	335 bp upstream
Tssr6551	transcription start site region 6551	407 bp upstream
Tssr6552	transcription start site region 6552	707 bp upstream
Tssr6553	transcription start site region 6553	1484 bp upstream
Tssr11507	transcription start site region 11507	564 bp downstream