rs33468780 SNP Detail

Summary

• ID
  rs33468780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102378299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTCTTGC TTTCCTAAAA
  CTTTCTGAGA TTCATAAGGA AGGTGATTTT TGGCTTGACC TTTCTCATCA GGTTTACTTC
  AGAGAGTCAA GAAGAGCCTG CTTGTTAGGC TGGTTTTTCC AAGTTGTTCC AGACTGGAAA
  TTGTGCAGTT TGAAGGATAA TTTATGGGTC TTTCGTGCGT TAAAGTGTAT TACTACGAAG
  K
  CTTTTGGGTG CTGTGGGTAT TAAGGAAAAC TCAGTGCACG TTCCCAGCTG CAGACCAAAA
  ATACTGCTCT CCTGGGTGCC TCTGCCCCCA TCTATCATGG GAGGCCAATG GAAACCCTGG
  AGAAAAGCCA TTTGATGTAT TGCCCCCATC CTCCCAGAGT CCTCTCTGGC AGTACCAGTC
  TACTCTCCCC ATAGGCATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816916	NES10725493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33468780					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816916	NES10725493	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102378299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	383 bp distal
Ngf	nerve growth factor	Intron
Rr582236	regulatory region 582236	1045 bp distal
Rr582237	regulatory region 582237	333 bp distal
Tssr30928	transcription start site region 30928	1340 bp downstream
Tssr30929	transcription start site region 30929	1071 bp downstream
Tssr30930	transcription start site region 30930	1051 bp downstream