rs33469397 SNP Detail

Summary

• ID
  rs33469397
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGTTACA CTCAGTTTGT TTACAAACTT GGTCACTCAT
  CCTGAAACCT AAAATGTCCT TCCCAGCTTT CCCAAGAACA TCCATTTCTT GAGGCTGACA
  S
  CAGCTCTTGT GTCTCACATC CTTACGGAAG TCTAGTGGGA TGAACCTCAC TTTCTGTTCT
  CAGTACTTAG ATTTAGCTGG GTCGGCAGAA AGGAGCAGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39539396	mCV25231736	ABI	CRAMUS_MOUSE	f	SNP		G	C						C
ss60261855	NES15764136	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	C	C	G	G		C	C	G	C		C
ss145758504	ENSMUSSNP3735755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
ss325417410	CHEV_17_52041216	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33469397					SNP	G	G	C	C	C	G	C	C	C	G	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261855	NES15764136	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208919 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1082 bp proximal
Rr405357	regulatory region 405357	1904 bp upstream