rs33469446 SNP Detail

Summary

• ID
  rs33469446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84496515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAAGAGG TCCTCATTCG GTTGCCTTTA GTGCAACTCC
  TACCAGCTTT CCATGGAAAA AGCAGTCCCA GAAGGCCCCT GGCTCTTTTT GAGAGGGGTC
  W
  CACACACACA CACCTCCACA CACCTAGCGA CCCCCACCCC CACCCCGTGA GGCCCATCTG
  GTCAGGTCCA GAACCCTTTA TCCCTACACT TCATACTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss39539218	mCV23110577	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146132070	ENSMUSSNP4752422	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs33469446					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84496515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1835 bp distal
Cpgi9566	CpG island 9566	65 bp distal
Gm36279	predicted gene, 36279	793 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	286 bp proximal
Rr333590	regulatory region 333590	1686 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	913 bp downstream
Thada	thyroid adenoma associated	989 bp downstream
Tssr146045	transcription start site region 146045	1970 bp downstream
Tssr146046	transcription start site region 146046	461 bp downstream
Tssr149667	transcription start site region 149667	1921 bp upstream
Tssr149668	transcription start site region 149668	1897 bp upstream
Tssr149669	transcription start site region 149669	1835 bp upstream
Tssr149670	transcription start site region 149670	1330 bp upstream
Tssr149671	transcription start site region 149671	1188 bp upstream
Tssr149672	transcription start site region 149672	1133 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1140 bp upstream