rs33469659 SNP Detail

Summary

• ID
  rs33469659
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3766231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTACAGAG ATCATTCTTT
  TCCAATACAG ATCTGGAGGA TAGGTTACTT TTTCAAACAT TTATTGATGC TCTCTCTGTG
  TGTGAAGAAA TCTCCAAGTC AGAGGGTAAA ATAGGGGGAT GCAGGAAGAT GGAACAACTC
  CAACACTGTG TCTAGGAAAC AGGCAGTGGA TCAGACCATC AGGGTTTAGA GCAGTGATTT
  K
  GAGACTGACA GGTTAGATGG AAGGTTTAAA CTGTCTTGTG AGTTAGAGCT GGGGTCACTA
  AAGCATGCAC TGGTCAGGCT GAGTGGCTCT TATTAATGGT GCATTAGGAA AAACAGCCTT
  GGTAGTGGGC TCAAGGAATA GGAGCCACCC TTCTGATTCA CCCCGAGGCA ATGGGCGCTA
  GGCTTAGTAG CAACTGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46280391	mCV22849370	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T		T
ss61076278	NES16052991	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		T	T	T	T	T	T	T	G	T
ss148548689	ENSMUSSNP3998280	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33469659					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076278	NES16052991	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3766231 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Gm16553	predicted gene 16553	within coordinates
Tssr80223	transcription start site region 80223	1316 bp downstream
Tssr80224	transcription start site region 80224	1331 bp downstream