rs33470022 SNP Detail

Summary

• ID
  rs33470022
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124749561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GAGCCGTTTC CTCAGCCACA
  W
  CACCTAATTT CTTTTTCACT TCAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss46279907	mCV23949785	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss145838163	ENSMUSSNP179458	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss322855976	CHEV_8_126546722	CHEVERUD	SCREENING_POP	f	SNP				T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs33470022					SNP	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124749561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	976 bp distal
Mir1967	microRNA 1967	100 bp downstream
Taf5l	TATA-box binding protein associated factor 5 like	1425 bp upstream
Tssr80012	transcription start site region 80012	1621 bp downstream
Tssr80013	transcription start site region 80013	1307 bp downstream
Tssr80014	transcription start site region 80014	1292 bp downstream
Tssr80015	transcription start site region 80015	1243 bp downstream
Tssr83422	transcription start site region 83422	1867 bp upstream
Tssr83423	transcription start site region 83423	1716 bp upstream
Tssr83424	transcription start site region 83424	1377 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates