rs33470152 SNP Detail

Summary

• ID
  rs33470152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9728096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAATTG GGTAGCTGAG
  AAAAATAGTT TTTTGTTCTT TTGGAATATG TATGTAATAA TATTACCATA TGTTGAATAA
  TTTGGAGAAA AAGTATGAGA TGATACATAT GAAGCACTTT CAACTGTACC TCCTGACACA
  CTGTTATTAC TGCTTCCCGC CCCAGGATCT GTATGCATAG TGTTTTTCAC TGGGAGAAAA
  R
  AATATCAAAA GAATGAACTA CCTTCAAAAC ATTGGTGTAA AAAGGATGTC ATGTCAAGAT
  CTTCTTAAAT GCTGTTTACA GGATCAAACT GAGTACCTTT CCTCTCCTTC TCCTTGCTCA
  GCTCTGTAGA CACTGCCTGC TTCTTGAAAT AGCTGTCTAC CACAGATAAA CATTACAGTG
  TGTTACTGGG TGTGTTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817383	NES10973617	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33470152					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817383	NES10973617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9728096 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	242 bp upstream
Tssr160530	transcription start site region 160530	273 bp upstream