rs33470276 SNP Detail

Summary

• ID
  rs33470276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33856080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGGTTA CGTTTCTGAG TCAGGGTCTC ATTATGTAGT
  GCTGGCTGGC CTGAAATTCA CTATGTAGAT TAGGCTAACC TTGGAAATGT AGTGAACTTC
  Y
  TGCTTCTGCT GGGATTACAA GTATGCACCA CTACGCCAGT TGCTTAGAGC ATGTACTTTG
  TGACTCCAGG GACATAGACA CATGTACACT CATCTATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39539405	mCV24098520	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss145493309	ENSMUSSNP3527424	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss325366934	CHEV_17_33774051	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33470276					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33856080 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	950 bp upstream
Tssr143785	transcription start site region 143785	694 bp upstream
Tssr143786	transcription start site region 143786	715 bp upstream
Tssr143787	transcription start site region 143787	983 bp upstream
Tssr143788	transcription start site region 143788	1014 bp upstream
Tssr143789	transcription start site region 143789	1024 bp upstream