rs33470287 SNP Detail

Summary

• ID
  rs33470287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17838504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCTACCT ACCGAGAGGA
  AAGACCACTG AACTTCCTCC TGCCTACTAC ATGTGAGAGC TTGTCAGCAT TCAACTCCAA
  GGCCTTTATT TAATACCAGC CTTTAAATAA TTCAGATAAC AGTTGATTAC TCCATTGCAA
  GAACTGTCGA GCTCTGCAAA ATCTGAATCA CACAATATTT CGTACATAAG AGATGCAATC
  Y
  TGACTTGTAG GCATCTAAGT AAAATGCACT TCTTGAGACC AAACCACACA AACTATTTTA
  ACATTTCTAT ATATAAAATC TGGCAAATTC CAATTTGCTT TACTACCAAG TAATTTTGCA
  TGCTTGCTTT CATTACTAAG ACATCTCATT CTACAGCTTA ATTTGGTCAG TTTACAATCC
  CTCATACAAA TATTTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817664	NES10865022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33470287					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817664	NES10865022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17838504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1688 bp proximal
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Rr573837	regulatory region 573837	within coordinates
Rr573838	regulatory region 573838	367 bp proximal
Rr573839	regulatory region 573839	1262 bp proximal
Rr573840	regulatory region 573840	1590 bp proximal
Rr573841	regulatory region 573841	1709 bp proximal
Tssr32672	transcription start site region 32672	965 bp downstream
Tssr32673	transcription start site region 32673	1186 bp downstream
Tssr32674	transcription start site region 32674	1228 bp downstream
Tssr32675	transcription start site region 32675	1267 bp downstream
Tssr32676	transcription start site region 32676	1967 bp downstream