rs33470290 SNP Detail

Summary

• ID
  rs33470290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17839233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATAAAATA AGATCTATTT AAAAAAAAAA AACTCTGAGT
  AAAGAAAGCT CTGGTAGTAT TGACCATTTA GAACCATTTC TATCCCTAAA ACTATTTATC
  R
  CTTTCTTTCA CTTCAAGAAC AGTTCTCTTT ACTGTACCAA GCAAGTTCAG TCTTCTATAT
  GGATCATGAA ACATCATGAA GTATAAAATC TACAGACTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817667	NES10865023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33470290					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817667	NES10865023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17839233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	959 bp proximal
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Rr573837	regulatory region 573837	662 bp distal
Rr573838	regulatory region 573838	within coordinates
Rr573839	regulatory region 573839	533 bp proximal
Rr573840	regulatory region 573840	861 bp proximal
Rr573841	regulatory region 573841	980 bp proximal
Rr573842	regulatory region 573842	1278 bp proximal
Tssr32672	transcription start site region 32672	236 bp downstream
Tssr32673	transcription start site region 32673	457 bp downstream
Tssr32674	transcription start site region 32674	499 bp downstream
Tssr32675	transcription start site region 32675	538 bp downstream
Tssr32676	transcription start site region 32676	1238 bp downstream
Tssr32677	transcription start site region 32677	1765 bp downstream