rs33470399 SNP Detail

Summary

• ID
  rs33470399
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17843517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATCCT ATTTCATATT
  AAGAACATAC TTACGTTTTT ATTTAGTCCA GCAGATTTTC CCAAATGACT TAATTTCTTC
  CTGAGGCAAT TTTAAAAATT CAGAATATTA TTGTTTTTTA AAAGGAAAGA AATAGAAAGG
  CTCTCATTTA GAGCACTGAG GGATGTTATC AGTGTGACCT TGACGTGTAA ATGGAGAAGG
  S
  ATGCTAGGTT TGAGTCCGAA CTCTTGTCTT CTTGCGTATC TGAGATGTTC TCGGTCTGGC
  TAAGAACAGG GACATGAGGA GAGATTTGTT TTTAAAGGTT ACCATTAGCG GTTCACTAGC
  TGAGGTTAGG AATTTTGTAT TTTTATATTT CGTGAAATTC ATGATTTAAT TATACTCCTC
  AAACAAATTA AGGGCAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817727	NES10865047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33470399					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817727	NES10865047	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17843517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	1061 bp proximal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	568 bp upstream
Rr573843	regulatory region 573843	1725 bp distal
Rr573844	regulatory region 573844	21 bp distal
Rr573845	regulatory region 573845	within coordinates
Rr573846	regulatory region 573846	104 bp proximal
Rr573847	regulatory region 573847	710 bp proximal
Rr573848	regulatory region 573848	880 bp proximal
Tssr28480	transcription start site region 28480	374 bp upstream
Tssr28481	transcription start site region 28481	539 bp upstream
Tssr28482	transcription start site region 28482	603 bp upstream
Tssr28483	transcription start site region 28483	698 bp upstream
Tssr28484	transcription start site region 28484	767 bp upstream
Tssr32678	transcription start site region 32678	254 bp downstream