rs33470417 SNP Detail

Summary

• ID
  rs33470417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43973758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCGGGA TCGGGGGCCG
  CGGGGAAGCT TTGCTGGTCA GCCTGGGCGT TCCAGGCCCC ACACCTCTTC AGGGTCCGCA
  CCCGACCTCG GCATGGGAAA ATTTTACAGT TTTATAGGTC TGGGAGGGCG CGGGAGCGTG
  GGGGGCACCA ACGATAGGGG TAACAGCCTT GAAGAGATCC TTAGTGATGT TTAAGAGATA
  Y
  TCGTTTTGGC AAGGCCAGCA AAGTGAGTTC CCAGAATTCG ACCCAGTCCG CTTCCGGAAT
  GGTTTCTTCT GATACTTTTG TTCTATTTTT AAGTTATTTG CTGGTGTTTG TTCAGGGTCC
  TTGAAATCTT TTGGGTTAGT CTTTTTTTTT TTTTTTTTTT CAAAGGGCCC GACTAATTTG
  TTTCGGGCGA ACTTTTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47302288	NES11082516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33470417					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47302288	NES11082516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43973758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	within coordinates
Gm57117	predicted gene, 57117	256 bp upstream
Rr29382	regulatory region 29382	within coordinates
Rr366891	regulatory region 366891	680 bp downstream
Tpp2	tripeptidyl peptidase II	within coordinates
Tssr6550	transcription start site region 6550	972 bp downstream
Tssr6551	transcription start site region 6551	904 bp downstream
Tssr6552	transcription start site region 6552	522 bp downstream
Tssr6553	transcription start site region 6553	159 bp upstream
Tssr11507	transcription start site region 11507	684 bp upstream