rs33470888 SNP Detail

Summary

• ID
  rs33470888
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33879332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG ACTCGGCTGG CACTCGGAGG
  K
  TCCGGGCGGG CTCAGAAGCA GTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45782477	mCV27570681	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss148214092	ENSMUSSNP1166330	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	G
ss321507757	CHEV_5_34064637	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33470888					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33879332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	within coordinates
Fgfr3	fibroblast growth factor receptor 3	within coordinates
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	within coordinates
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	180 bp distal
Rr609612	regulatory region 609612	within coordinates
Rr609613	regulatory region 609613	329 bp proximal
Tssr45829	transcription start site region 45829	1156 bp downstream
Tssr45830	transcription start site region 45830	188 bp downstream