rs33471001 SNP Detail

Summary

• ID
  rs33471001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9728215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTGTAC CTCCTGACAC
  ACTGTTATTA CTGCTTCCCG CCCCAGGATC TGTATGCATA GTGTTTTTCA CTGGGAGAAA
  AGAATATCAA AAGAATGAAC TACCTTCAAA ACATTGGTGT AAAAAGGATG TCATGTCAAG
  ATCTTCTTAA ATGCTGTTTA CAGGATCAAA CTGAGTACCT TTCCTCTCCT TCTCCTTGCT
  M
  AGCTCTGTAG ACACTGCCTG CTTCTTGAAA TAGCTGTCTA CCACAGATAA ACATTACAGT
  GTGTTACTGG GTGTGTTTAA TGTGTAAATA TATTGTGGGA ACAAGGGAGG CTGGTTTTTC
  AAGTTCCTGC TCTTAGCACT TCCTGAGGGT CAAGTAGTCC AGTACAGTTT GTGTGTCTGT
  AAGAAAAGTG AGCCTACAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817392	NES10973620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33471001					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817392	NES10973620	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9728215 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	123 bp upstream
Tssr160530	transcription start site region 160530	154 bp upstream