rs33471249 SNP Detail

Summary

• ID
  rs33471249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43974242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTCTTT AAGAGCAGGG
  ACCTTACTGA TGTTAAAAAA AAATGCCTGA ATAAAATGTA TTCTGTGTTT AAATAGCCTC
  TTACTAAAAC CCCCTCATAA GTACTCTCTA ACCTTTGTTG AAGAGCTTAT CTGACTAAAA
  CTAGAGTTTA TTTACCCTCT TTTCGGTCCG TGGTCAGTTT ATCAAATAGA TAGATTAGAT
  Y
  ACATTGATAC CATCTTATCC TTGTTCCTCA CAAAAGAGGG ATACTAATTC CTCTCCTCCT
  AGCCCTTGAT TTGTTTCCTC CAATCTTTAG TTTTCTCATT GTGCTGCCTA ATAATTGACA
  TAAATGGATG GGAAGGTAAT TGACGTACAT GTTAGAGGTT ATTGGAAAGG ATAGGAAAGA
  AGCCTGTGTG GACACTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47302300	NES11082523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33471249					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47302300	NES11082523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43974242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	429 bp distal
Gm57117	predicted gene, 57117	740 bp upstream
Rr29382	regulatory region 29382	within coordinates
Rr366891	regulatory region 366891	1164 bp downstream
Tpp2	tripeptidyl peptidase II	within coordinates
Tssr6550	transcription start site region 6550	1456 bp downstream
Tssr6551	transcription start site region 6551	1388 bp downstream
Tssr6552	transcription start site region 6552	1006 bp downstream
Tssr6553	transcription start site region 6553	321 bp downstream
Tssr11507	transcription start site region 11507	1168 bp upstream