rs33471277 SNP Detail

Summary

• ID
  rs33471277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17840744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGGCT GGGCGCGCTG
  CGGGGCAGCG TCAGACTCAG GGTCCTGGGG GAGTCGGGGA CTGAGGGCCG ACGCCCCGAG
  GCCGGGACGG CTCCTCCTGA GACTTCCTTC TGCCGTGCTC TTTCGCAGCT GTTGACTTTC
  TGTCGTGGGA CAGGGGACCG GCTGTGGGCA TCTGGGCTAA GTGAGGTATT GCGGAGACCG
  R
  ACCAGGCCTG CTGCGGCCAC CGCCTCTCCG GACGCCTGGT GTCCGCGGCC CCGGCCGGGC
  CACGGGCAAG CACCTGGGCT CGGACCCAGG GTCTACGAGA ACGTGGGCGC CTCCCGCGTG
  GGGTCTTCGG CTTCTCCCAA ACGCTCCCCG CCTCCCTGCA CGTGCAAACG TGGCGGGACA
  GCTGGTGAGG CTGGGCGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817676	NES10865026	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33471277					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817676	NES10865026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17840744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	within coordinates
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	864 bp downstream
Gm66000	predicted gene, 66000	760 bp downstream
Rr573838	regulatory region 573838	979 bp distal
Rr573839	regulatory region 573839	651 bp distal
Rr573840	regulatory region 573840	532 bp distal
Rr573841	regulatory region 573841	234 bp distal
Rr573842	regulatory region 573842	within coordinates
Rr573843	regulatory region 573843	548 bp proximal
Tssr32672	transcription start site region 32672	1264 bp upstream
Tssr32673	transcription start site region 32673	1023 bp upstream
Tssr32674	transcription start site region 32674	996 bp upstream
Tssr32675	transcription start site region 32675	964 bp upstream
Tssr32676	transcription start site region 32676	262 bp upstream
Tssr32677	transcription start site region 32677	254 bp downstream