rs33471280 SNP Detail

Summary

• ID
  rs33471280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT ACCCCAAGAG TGCCTCGATC
  K
  AGCTGGGAGC AGCAAAAGAA AGTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46817679	NES10865027	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	G	T	T	T	T		T	T	T	T		T
ss320673705	CHEV_3_17687125	CHEVERUD	SCREENING_POP	f	SNP									T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33471280					SNP	G	T	T	G	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817679	NES10865027	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	within coordinates
Gm10742	predicted gene 10742	227 bp upstream
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	1409 bp downstream
Gm66000	predicted gene, 66000	215 bp downstream
Rr573838	regulatory region 573838	1524 bp distal
Rr573839	regulatory region 573839	1196 bp distal
Rr573840	regulatory region 573840	1077 bp distal
Rr573841	regulatory region 573841	779 bp distal
Rr573842	regulatory region 573842	within coordinates
Rr573843	regulatory region 573843	3 bp proximal
Rr573844	regulatory region 573844	1707 bp proximal
Tssr32672	transcription start site region 32672	1809 bp upstream
Tssr32673	transcription start site region 32673	1568 bp upstream
Tssr32674	transcription start site region 32674	1541 bp upstream
Tssr32675	transcription start site region 32675	1509 bp upstream
Tssr32676	transcription start site region 32676	807 bp upstream
Tssr32677	transcription start site region 32677	280 bp upstream