rs33471282 SNP Detail

Summary

• ID
  rs33471282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTAGCT GTGCGGCCCC
  GAGGCCTGAC ACTAAAGTCT GGGTCGCTGC CAGCCGCTTA ATGTACCCCA AGAGTGCCTC
  GATCTAGCTG GGAGCAGCAA AAGAAAGTGG GAGCGAGGAG GAGGAGAAGG AAGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG AGGAAGGGTG AAGGAAAGAA AACAGAGGGA AAGGAAGGCT
  R
  CGAACTCAGG CCAGCGCAGA GGGAGTAGGG CTCATTGTCC CGTCCCTTCA GTCCAATTGA
  TATGCTAATC TCTTTTCTGA TGCGATACAA AGAACACCTT TGCACTTTAA AAAGACTTTT
  GTGCCCTGGC TACAGAAGTT TATTATCCAC TAATTAGCAA CAACTTCTGG CAATGAGTTG
  GGTTTCGTTT TCATAAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817682	NES10865028	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33471282					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817682	NES10865028	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	110 bp distal
Gm10742	predicted gene 10742	343 bp upstream
Gm56811	predicted gene, 56811	103 bp upstream
Gm65999	predicted gene, 65999	1525 bp downstream
Gm66000	predicted gene, 66000	99 bp downstream
Rr573838	regulatory region 573838	1640 bp distal
Rr573839	regulatory region 573839	1312 bp distal
Rr573840	regulatory region 573840	1193 bp distal
Rr573841	regulatory region 573841	895 bp distal
Rr573842	regulatory region 573842	114 bp distal
Rr573843	regulatory region 573843	within coordinates
Rr573844	regulatory region 573844	1591 bp proximal
Tssr32672	transcription start site region 32672	1925 bp upstream
Tssr32673	transcription start site region 32673	1684 bp upstream
Tssr32674	transcription start site region 32674	1657 bp upstream
Tssr32675	transcription start site region 32675	1625 bp upstream
Tssr32676	transcription start site region 32676	923 bp upstream
Tssr32677	transcription start site region 32677	396 bp upstream