rs33471837 SNP Detail

Summary

• ID
  rs33471837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9728578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTTTGT GTGTCTGTAA
  GAAAAGTGAG CCTACAAAAG CGTTCTAGCC TTACGGAGGT AAGATTGATG TCCCTGGGGC
  TCTCTACTGT GGTATTTACT TTGTTGATTT TTGTATTTTG TGATACAAAA GATTTGAGGT
  GGGCAGATGT TTCCTGGTTA GGAAAAAAAA TGATTCTTTC TACCACTTGA TATTGGAACT
  S
  ATCATAAAGT GAGAAAAAAA TATGGAGTAA GGGGCATTTG CCTGTTAGAT TGCTTGATGG
  CCTAATTTGA TAGATTGGGA TGGAAGGTAT AAGTATTTTC TTAATTTATT ATCCAAAGTG
  CAATCTTATG GTAGAACCAC CGAAAAGCCA AGTAGGAATC CTAAGACAAA AATAAATCAA
  GTTGATAGCA AAAGTATTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817398	NES10973622	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33471837					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817398	NES10973622	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9728578 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	224 bp downstream
Tssr160530	transcription start site region 160530	196 bp downstream