rs33471996 SNP Detail

Summary

• ID
  rs33471996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17844838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCCTCG CTGAAAGATT
  GGTTCCTGTC GCTCAAAGGG TAGGACTACG GAGCTACCGG ACGAGCTCTG GGGACAGGAT
  GGAGTCAAAA GGAGAGATCT TAGACTGGGA GATGATGGGC CTCCATCCCC ACAACAACAC
  ACCTAGTTTA GAGCCCTCTG CTGCCCACCG CTAACACCCG TTGTCTTGGG AGGATTAACA
  Y
  GGCCCTGAGC GCTGCTTCTG GAACCGAGCC TTTCCTGCGT TTTTGTTTTG TTTTGTTTTG
  TTTTTAACTT AAACCTTAAA GCTGGGATCT TCTAGACATC AGGGCTAAGT GAGGATGCCT
  CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GACCAAACAA TATAAATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817745	NES10864895	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33471996					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817745	NES10864895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17844838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	within coordinates
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573844	regulatory region 573844	1342 bp distal
Rr573845	regulatory region 573845	1218 bp distal
Rr573846	regulatory region 573846	612 bp distal
Rr573847	regulatory region 573847	442 bp distal
Rr573848	regulatory region 573848	within coordinates
Rr573849	regulatory region 573849	1094 bp proximal
Rr573850	regulatory region 573850	1946 bp proximal
Tssr28480	transcription start site region 28480	911 bp downstream
Tssr28481	transcription start site region 28481	719 bp downstream
Tssr28482	transcription start site region 28482	702 bp downstream
Tssr28483	transcription start site region 28483	606 bp downstream
Tssr28484	transcription start site region 28484	540 bp downstream
Tssr32678	transcription start site region 32678	1023 bp upstream