rs33472424 SNP Detail

Summary

• ID
  rs33472424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG GTTAGAAAGC AATCACTGGC
  K
  TTGGTTGCTC AACCGAAGTA GGTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46817685	NES10865029	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	G	G	T	T	T	G	T		T	T	T	T		T
ss320673706	CHEV_3_17687527	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33472424					SNP	G	T	T	G	G	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817685	NES10865029	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	396 bp distal
Gm10742	predicted gene 10742	629 bp upstream
Gm56811	predicted gene, 56811	389 bp upstream
Gm65999	predicted gene, 65999	1811 bp downstream
Gm66000	predicted gene, 66000	within coordinates
Rr573838	regulatory region 573838	1926 bp distal
Rr573839	regulatory region 573839	1598 bp distal
Rr573840	regulatory region 573840	1479 bp distal
Rr573841	regulatory region 573841	1181 bp distal
Rr573842	regulatory region 573842	400 bp distal
Rr573843	regulatory region 573843	within coordinates
Rr573844	regulatory region 573844	1305 bp proximal
Rr573845	regulatory region 573845	1806 bp proximal
Rr573846	regulatory region 573846	1930 bp proximal
Tssr32673	transcription start site region 32673	1970 bp upstream
Tssr32674	transcription start site region 32674	1943 bp upstream
Tssr32675	transcription start site region 32675	1911 bp upstream
Tssr32676	transcription start site region 32676	1209 bp upstream
Tssr32677	transcription start site region 32677	682 bp upstream