rs33472427 SNP Detail

Summary

• ID
  rs33472427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG TGTCTAAATA TAAAGGCTCC
  W
  TTGGAAGGAC TTTGCAGGAT CCAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46817688	NES10865030	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	T	T	T	T		T	T	T	T		T
ss320673707	CHEV_3_17687597	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33472427					SNP	A	T	T	A	A	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817688	NES10865030	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	466 bp distal
Gm10742	predicted gene 10742	699 bp upstream
Gm56811	predicted gene, 56811	459 bp upstream
Gm65999	predicted gene, 65999	1881 bp downstream
Gm66000	predicted gene, 66000	within coordinates
Rr573838	regulatory region 573838	1996 bp distal
Rr573839	regulatory region 573839	1668 bp distal
Rr573840	regulatory region 573840	1549 bp distal
Rr573841	regulatory region 573841	1251 bp distal
Rr573842	regulatory region 573842	470 bp distal
Rr573843	regulatory region 573843	within coordinates
Rr573844	regulatory region 573844	1235 bp proximal
Rr573845	regulatory region 573845	1736 bp proximal
Rr573846	regulatory region 573846	1860 bp proximal
Tssr32675	transcription start site region 32675	1981 bp upstream
Tssr32676	transcription start site region 32676	1279 bp upstream
Tssr32677	transcription start site region 32677	752 bp upstream