rs33472430 SNP Detail

Summary

• ID
  rs33472430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGCCTCA GATTCTTGAG
  TTTTCCTTGG CAGGTGTTTC TTAGGATAGC GAAGTATGCA GGAGAGGCCC ATACCTAGGA
  AACGTGAGGT CAGCTTTCAT ACAGTCCTAA GGCCTTCCTA GAGCTCCGGG GCAAAGCTAG
  TATTGCCAGA ACTGGAGAAG AAGAGGCTGG GTCAAGTACC TGTACTGGGT GGTCTGAAGT
  Y
  GCCACCCCAC TGAGCCATCT CTGCTAGCTA ACCAAAGCTA AGCACTGCAA CTTCCCCGTA
  GTGGGCGGGA TGCACTGAAC ACTCTGACCT GGCCCCTCCA CGGGCCAGGC AAGTCCTTGA
  GGATCTTTAG CAATCACACA TCCCAGGTCA ATAAACTGAA AACGGATAGA ATGAACATGA
  TCAGTGAAAA GATACAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817691	NES10865031	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33472430					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817691	NES10865031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	796 bp distal
Gm10742	predicted gene 10742	1029 bp upstream
Gm56811	predicted gene, 56811	789 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1994 bp upstream
Rr573839	regulatory region 573839	1998 bp distal
Rr573840	regulatory region 573840	1879 bp distal
Rr573841	regulatory region 573841	1581 bp distal
Rr573842	regulatory region 573842	800 bp distal
Rr573843	regulatory region 573843	299 bp distal
Rr573844	regulatory region 573844	905 bp proximal
Rr573845	regulatory region 573845	1406 bp proximal
Rr573846	regulatory region 573846	1530 bp proximal
Tssr28480	transcription start site region 28480	1800 bp upstream
Tssr28481	transcription start site region 28481	1965 bp upstream
Tssr32676	transcription start site region 32676	1609 bp upstream
Tssr32677	transcription start site region 32677	1082 bp upstream
Tssr32678	transcription start site region 32678	1680 bp downstream