rs33472433 SNP Detail

Summary

• ID
  rs33472433
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCCAC TGAGCCATCT
  CTGCTAGCTA ACCAAAGCTA AGCACTGCAA CTTCCCCGTA GTGGGCGGGA TGCACTGAAC
  ACTCTGACCT GGCCCCTCCA CGGGCCAGGC AAGTCCTTGA GGATCTTTAG CAATCACACA
  TCCCAGGTCA ATAAACTGAA AACGGATAGA ATGAACATGA TCAGTGAAAA GATACAGGGA
  M
  GGAAAATGAT GTACCTAGTG CCTCCCCAAG TCAAAGTCCT CTGCCCCGAT AAAAAACACC
  GACCTTTAGA CCTGCTTTCT GTCTGGACTC CAGGCACAGA AATGATATTT TGTCAAGTAA
  TTCCAGCCCC CACTCAGCAC TTTACAAACA TGTTTTACAA ACACACAAGA ACGTATCTTT
  TCTTTAGAAT GTTTTATTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817694	NES10865032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33472433					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817694	NES10865032	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	997 bp distal
Gm10742	predicted gene 10742	1230 bp upstream
Gm56811	predicted gene, 56811	990 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1793 bp upstream
Rr573841	regulatory region 573841	1782 bp distal
Rr573842	regulatory region 573842	1001 bp distal
Rr573843	regulatory region 573843	500 bp distal
Rr573844	regulatory region 573844	704 bp proximal
Rr573845	regulatory region 573845	1205 bp proximal
Rr573846	regulatory region 573846	1329 bp proximal
Rr573847	regulatory region 573847	1935 bp proximal
Tssr28480	transcription start site region 28480	1599 bp upstream
Tssr28481	transcription start site region 28481	1764 bp upstream
Tssr28482	transcription start site region 28482	1828 bp upstream
Tssr28483	transcription start site region 28483	1923 bp upstream
Tssr28484	transcription start site region 28484	1992 bp upstream
Tssr32676	transcription start site region 32676	1810 bp upstream
Tssr32677	transcription start site region 32677	1283 bp upstream
Tssr32678	transcription start site region 32678	1479 bp downstream